Linear Linear Microbial Density With Od600Nm


APPENDIX 2 (CONTENT 2)

2.1 Linear curve of microbial density with OD 600nm

Figure 2.1 Linear curve of Bacillus licheniformis B85 bacteria


Figure 2.2 Linear curve of P. stutzeri KL15 bacteria


Figure 2.3 Linear curve of R. rhodochrous T 9 bacteria

2.2 Biomass human environment components

Luria Bertani (LB) medium

Ingredient

g/l

Peptone

10

Yeast extract

5

NaCl

10

Maybe you are interested!

Nutrient Broth (NB)

Ingredient

g/l

Meat height

1.5

Yeast extract

1.5

Peptone

5

NaCl

5


Tryptic soybean broth (TSB) medium

Ingredient

g/l

Tryptose

17 g

Papaic Digest Soybean Meal

3 g

NaCl

5 g

Dextrose (Glucose)

2.5 g

K2HPO4

2.5 g


2.3 Liquid production environment

Based on TSB medium composition, some mineral components were added, balancing the Carbon and glucose content.

Tryptic soybean broth (TSB) production medium

Ingredient

g/l

Peptone

10 g

Glucose

10 g

CaCl2

0.2 g

MgSO 4

1g

K2HPO4

2 g

NaCl

1 g


2.4 Semi-solid medium composition

Based on the composition of TSB liquid production medium, some solid components such as rice bran, corn bran, wheat bran, soybean residue are added as technical Nitrogen sources for industrial production (Tran Thi Thanh, 2000; Nguyen Duc Luong, 2006) while still keeping the carbon source as glucose and minerals as the liquid medium optimized for bacterial species. Water is added to about 50% humidity.

Table 2.1 Composition of semi-solid medium


Ingredient

grams

Rice bran/corn bran/wheat bran/soybean meal CaCl 2

NaCl K 2 HPO 4 MgSO 4

Glucose

980

0.2

1

2.5

1

20


2.5. Creating liquid preparations

2.5.1 Survey of biomass multiplication conditions of bacterial strains on liquid medium


Table 2.2 Effect of biomass culture medium on three bacterial strains

Status

Bacterial strain

Bacterial density (log.CFU/mL)


Environment

LB

TSB

NB

1

R. rhodochrous T 9

8.31b ± 0.04

8.37b ± 0.01

8.87a ± 0.08

2

B. licheniformis B85

8.58b ± 0.02

8.84a ± 0.02

8.70ab ± 0.13

3

P. stutzeri KL15

8.63ab ± 0.08

8.86a ± 0.09

8.32b ± 0.001

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to the bacterial strain biomass media (p < 0.01) .


Table 2.3 Effect of seed density on biomass multiplication of three bacterial strains

Status

Bacterial strain

Bacterial density (log.CFU/mL)



Bacterial density

10 6

10 7

10 8

10 9

1

R. rhodochrous T 9

8.20c ± 0.03

8.69b ± 0.01

9.66a ± 0.01

9.69a ± 0.01

2

B. licheniformis B85

8.30c ± 0.02

8.73b ± 0.01

9.69a ± 0.02

9.75a ± 0.03



3

P. stutzeri KL15

8.39c ± 0.04

8.78b ± 0.01

9.66a ± 0.02

9.76a ± 0.03

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences in the density of bacterial strains (p < 0.01) .


Table 2.4 Effect of growth time on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/mL)



Time

24

hour

36

hour

48

hour

60

hour




72 hours

1

R. rhodochrous T 9

8.53 d

± 0.02

9.67a

±0.01

9.72a

±0.02

9.49a

±0.01

9.02 c

±0.01

2

B. licheniformis B85

8.49 c

±0.01

9.70a

±0.02

9.73a

±0.02

9.09b

±0.01

8.99b

±0.01

3


P. stutzeri KL15

8.74 c

±0.02

9.70a

± 0.01

9.78a

± 0.02

9.26b

± 0.01

8.70 c

± 0.03

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to bacterial strain growth time (p < 0.01) .


2.5.2 Survey of biomass multiplication conditions of bacterial strains on liquid production medium (environmental composition section 2.2)


Table 2.5 Effect of inoculum loading ratio on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/mL)



Seed loading rate

1%

2.5%

3.5%

5%

1

R. rhodochrous T 9

9.66b ± 0.01

9.98a ± 0.01

9.66b ± 0.01

9.69b ± 0.01

2

B. licheniformis B85

9.66b ± 0.01

10.03a ± 0.01

9.69b ± 0.03

9.75b ± 0.01

3

P. stutzeri KL15

9.84b ± 0.07

10.07a ± 0.03

9.78b ± 0.04

9.73b ± 0.04

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences in the loading ratio of the same bacterial strain (p < 0.01) .


Table 2.6 Effect of time on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/mL)


Time

12 hours

24 hours

36 hours

48 hours

1

R.rhodochrous T 9

9.66b ± 0.01

9.98a ± 0.01

10.01a ± 0.01

9.98a ± 0.01

2

B. licheniformis B85

9.63b ± 0.01

10.01a ± 0.01

10.03a ± 0.01

9.99a ± 0.03

3

P. stutzeri KL15

9.75b ± 0.04

10.13a ± 0.05

10.19a ± 0.01

10.07a ± 0.03

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences of time according to bacterial strain (p < 0.01) .


Table 2.7 Effect of temperature on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/mL)



Temperature

30 o C

33 o C

35 o C

37 o C

1

R. rhodochrous T 9

9.98ab ± 0.01

10.04a ± 0.01

9.91 bc ±0.01

9.85c ± 0.02

2

B. licheniformis B85

10.01ab ± 0.01

9.99b ± 0.01

10.07a ± 0.01

10.05ab ± 0.01

3

P. stutzeri KL15

9.87±0.07

9.88 ±0.05

9.96±0.02

10.23±0.03

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to the temperature of the bacterial strain (p < 0.01) (The P. stutzeri KL15 strain alone is not statistically significant because p>0.05, so no ranking test is performed).


Table 2.8 Effect of pH on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/mL)



pH

6.0

6.5

7.0

7.5

1

R. rhodochrous T 9

9.98b ± 0.01

10.05a ± 0.02

9.98a ± 0.01

9.78c ± 0.02

2

B. licheniformis B85

9.87b ± 0.01

9.97a ± 0.01

9.98a ± 0.02

10.03a ± 0.01

3

P. stutzeri KL15

9.85b ± 0.01

9.82b ± 0.05

10.02a ± 0.02

9.87b ± 0.01

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to pH of bacterial strains (p < 0.01) .


Table 2.9 Effect of nitrogen source on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/mL)



Nitrogen Source

Ammonium sulfate

Yeast extract

Sodium nitrate

peptone

1

R. rhodochrous T 9

8.66c ± 0.01

9.75b ± 0.02

8.50d ± 0.01

10.03a ± 0.01

2

B. licheniformis B85

8.55c ± 0.01

10.11a ± 0.03

8.68b ± 0.01

10.07a ± 0.01

3

P. stutzeri KL15

8.20b ± 0.05

10.08a ± 0.02

8.03b ± 0.06

10.00a ± 0.04

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to nitrogen source of bacterial strains (p < 0.01) .


Table 2.10 Effect of carbon source on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/mL)



Carbon Source

Glucose

Maltodextrin

Molasses

Sucrose

1

R.rhodochrous T9

10.07a ± 0.01

8.65c ± 0.01

9.75b ± 0.02

8.50d ± 0.01

2

B. licheniformis B85

10.10a ± 0.02

8.68b ± 0.01

10.11a ± 0.2

8.55c ± 0.01

3

P. stutzeri KL15

9.24b ± 0.05

9.28b ± 0.04

9.41a ± 0.06

8.75c ± 0.05

Bacterial density (Log10.CFU/mL) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to carbon source of bacterial strain (p < 0.01) .

Investigation of carbon and nitrogen source contents of three bacterial strains.


Figure 2.4 Investigation of molasses content of B.licheniformis B85 Figure 2.5 Investigation of molasses content of P. stutzeri KL15

Figure 2.6 Investigation of molasses content of R.rhodochrous T9 Figure 2.7 Investigation of high yeast content of B.licheniformis B85

Figure 2.8 Survey of high yeast content of P. stutzeri KL15 Figure 2.9 Survey of peptone content of R. rhodochrous T9


Purpose : The survey of carbon and nitrogen source content is to survey and select the content ranges.


The content of molasses and yeast extract gave the highest density of B. licheniformis B85 and P. Stutzeri KL15 bacteria , and the content of peptone and glucose gave the highest density of R. rhodochrous T9 bacteria, to arrange in the experiment to optimize the composition of liquid production medium for 3 bacterial strains. This is the intermediate experiment after selecting the best C and N sources, to have the best choice, move to the optimization content.

2.5.3 Optimizing the production environment of bacterial strains

Screening of significant factors using Plackett – Burman matrix Bacillus licheniformis B85 Table 2.11 Variables in Plackett - Burman matrix and their influence




Sign




Level


Level of influence


effect

Element

Unit

Low (-1)


(-1)


High


Image


Prob>F

enjoy

X1

Molasses

g/L

2

6


0.0433a 0.0182

X2

Yeast extract

g/L

9

25


-0.06a 0.0050

X3

K2HPO4

g/L

1.25

5.00


-1.45862E-15 b 1.0000

X4

MgSO4

g/L

0.25

1.50


1.46724E- 15b 1.0000

X5

CaCl2

g/L

0.05

0.40


0.0033 b 0.8013

X6

NaCl

g/L

1

5


-0.0633a 0.0040

α: significant at confidence level α = 0.05; b : not significant at confidence level α = 0.05

Table 2.12 Plackett – Burman design matrix


Solution Variables


Bacterial density (Log.CFU/ml)

awake


X1


X2


X3


X4


X5


X6


Experiment


Model

1

1

-1

1

1

-1

1

10.12

10.10

2

1

1

-1

1

1

1

10.03

10.04

3

-1

1

1

-1

1

1

10.01

9.99

4

-1

-1

-1

-1

-1

-1

10.13

10.12

5

-1

-1

1

-1

1

1

10.04

10.05

6

-1

-1

-1

1

-1

1

10.03

10.05

7

-1

1

-1

1

1

-1

10.07

10.06

8

1

1

1

-1

-1

-1

10.08

10.10

9

-1

-1

1

1

1

-1

10.16

10.16

10

1

1

-1

-1

-1

1

10.04

10.04

11

1

-1

-1

-1

1

-1

10.16

10.16

12

-1

1

1

1

-1

-1

10.05

10.06


Table 2.13 Coefficients in the objective function equation


Element

Estimated coefficient

Degrees of freedom

Standard error

95% CI low

95% CI high

VIF

Intercept

11.42

1

0.0093

11.40

11.44


A- Molasses

0.0386

1

0.0068

0.0211

0.0560

1.43

B-Yeast extract

-0.0188

1

0.0057

-0.0334

-0.0041

1,0000



C-NaCl

-0.0439

1

0.0068

-0.0614

-0.0265

1.38

AB

0.0250

1

0.0080

0.0043

0.0457

1,0000

AC

0.0404

1

0.0109

0.0122

0.0685

1.73

BC

0.0425

1

0.0080

0.0218

0.0632

1,0000

-0.0673

1

0.0092

-0.0908

-0.0438

1.21

-0.1577

1

0.0092

-0.1812

-0.1342

1.21

-0.0248

1

0.0092

-0.0483

-0.0013

1.21

Screening of significant factors using Plackett – Burman matrix Pseudomonas stutzeri KL15

Table 2.14 Variables in the Plackett - Burman matrix and their effects

Level of influence

Sign



Element

Unit








Short

High

Image


effect













Prob>F




(-1)

(-1)

enjoy


X1

Molasses

g/L

2

6

0.55a

0.0002

X2

Yeast extract

g/L

9

25

0.32a

0.0029

X3

K2HPO4

g/L

1.25

5.00

0.03b

0.6502

X4

MgSO4

g/L

0.25

1.50

0.25a

0.0079

X5

CaCl2

g/L

0.05

0.40

0.09b

0.1933

X6

NaCl

g/L

1

5

-0.15b

0.0568

α: significant at confidence level α = 0.05; b : not significant at confidence level α = 0.05

Table 2.15 Plackett - Burman design matrix

Bacterial density

Solution Variables

(Log.CFU/ml)


awake


X 1



X 2



X 3



X 4



X 5



X 6



Experiment


Model

1


1


1


-1


-1


-1


1

10.19

10.10

2


-1


1


-1


1


1


-1

10.01

10.04

3


1


-1


1


1


-1


1

10.05

10.06

4


1


1


-1


1


1


1

10.36

10.44

5


-1


1


1


-1


1


1

9.69

9.67

6


1


1


1


-1


-1


-1

10.16

10.27

7


-1


-1


1


-1


1


1

9.33

9.35

8


-1


1


1


1


-1


-1

10.08

9.98

9


-1


-1


-1


-1


-1


-1

9.31

9.38

10


-1


-1


-1


1


-1


1

9.48

9.49

11


1


-1


-1


-1


1


-1

10.10

10.01

12


1


-1


1


1


1


-1

10.31

10.29


Table 2.16 Coefficients in the objective function equation


Element

Estimated coefficient

Degrees of freedom

Standard error

95% CI

short

95% CI

High

VIF

Intercept

11.55

1

0.0044

11.52

11.56


A- Molasses

0.155

1

0.0067

0.0150

0.0518

1,0000

B-Yeast extract

0.043

1

0.0087

0.0011

0.019

1,0000

C - Mg2SO4

0.058

1

0.0070

0.0027

0.089

1,0000



AB

0.0255

1

0.0038

0.0114

0.0546

1,0000

AC

0.0125

1

0.0038

0.0173

0.0023

1,0000

BC

0.01

1

0.0038

0.0148

0.0048

1,0000

-0.1675

1

0.0040

-0.1748

-0.1544

1.01

-0.095

1

0.0040

-0.1773

-0.1569

1.01

-0.110

1

0.0040

-0.1898

-0.1694

1.01

Screening of significant factors using Plackett – Burman matrix Rhodococcus rhodochrous T 9Table 2.17 Variables in the Plackett - Burman matrix and their effects




Sign




Level


Image level

enjoy


Element

Unit









Short


High

Image


effect















Prob>F




(-1)


(-1)

enjoy


X1

Glucose

g/L

6


10

0.0683a

0.042

X2

Peptone

g/L

4


8

0.0683a

0.042

X3

K2HPO4

g/L

1.25


5.00

-0.0083b

0.5713

X4

MgSO 4

g/L

0.25


1.50

0.005 b

0.7313

X5

CaCl2

g/L

0.05


0.40

0.015 b

0.3255

X6

NaCl

g/L

1


5

-0.075a

0.0028

a : significant at confidence level α = 0.05; b : not significant at confidence level α = 0.05

Table 2.18 Plackett - Burman design matrix


Solution Variables


Bacterial density (Log10. CFU/ml)

awake


X 1


X 2


X 3


X 4


X 5


X 6


Experiment


Model

1

-1

-1

-1

1

-1

1

9.87

9.89

2

1

1

-1

-1

-1

1

10.03

10.03

3

1

1

1

-1

-1

-1

10.06

10.10

4

-1

-1

1

-1

1

1

9.87

9.89

5

1

1

-1

1

1

1

10.04

10.03

6

1

-1

1

1

1

-1

10.05

10.03

7

-1

-1

-1

-1

-1

-1

9.98

9.96

8

1

-1

1

1

-1

1

9.96

9.96

9

-1

1

1

1

-1

-1

10.03

10.03

10

-1

1

-1

1

1

-1

10.04

10.03

11

-1

1

1

-1

1

1

9.98

9.96

12

1

-1

-1

-1

1

-1

10.04

10.03


Table 2.19 Coefficients in the objective function equation


Element

Estimated coefficient

Degrees of freedom

Standard error

95% CI

short

95% CI

High

VIF

Intercept

10.47

1

0.0044

10.46

10.48


A-Glucose

-0.0088

1

0.0027

-0.0157

-0.0018

1,0000

B-Peptone

0.0150

1

0.0027

0.0081

0.0219

1,0000

C-NaCl

-0.0088

1

0.0027

-0.0157

-0.0018

1,0000

AB

-0.0500

1

0.0038

-0.0598

-0.0402

1,0000



AC

-0.0075

1

0.0038

-0.0173

0.0023

1,0000

BC

-0.0050

1

0.0038

-0.0148

0.0048

1,0000

-0.1646

1

0.0040

-0.1748

-0.1544

1.01

-0.1671

1

0.0040

-0.1773

-0.1569

1.01

-0.1796

1

0.0040

-0.1898

-0.1694

1.01


2.6. Creating powder products

2.6.1 Survey of factors affecting the production process on semi-solid medium. Table 2.20 Effects of environment on the biomass of three bacterial

Status

Bacterial strain


Bacterial density ( Log10.CFU/mL)




Environment


Rice bran


Corn bran

Soybean residue


Wheat bran

1

R. rhodochrous T 9

9.02a ± 0.01

8.88b ± 0.02

8.53c ± 0.02

8.93ab ± 0.02

2

B. licheniformis B85

8.91b ± 0.02

8.80 bc ±0.05

9.47a ± 0.05

8.58c ± 0.06

3

P. stutzeri KL15

8.75 bc ±0.04

9.10a ± 0.04

8.85ab ± 0.02

8.53c ± 0.08

Bacterial density (Log.CFU/gram) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to bacterial strain environment (p < 0.01) .

Table 2.21 Effect of seed ratio on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/g)



Breeding ratio







2.5%

5%

7.5%

10%

1

R. rhodochrous T 9

8.27b ± 0.1

9.02a ± 0.01

9.23a ± 0.04

9.26a ± 0.04

2

B. licheniformis B85

8.40b ± 0.04

9.47a ± 0.01

9.54a ± 0.05

9.50a ± 0.01

3

P. stutzeri KL15

8.43c ± 0.01

9.10b ± 0.04

9.30a ± 0.03

9.34a ± 0.05

Bacterial density (Log.CFU/gram) calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences in the similarity ratio of bacterial strains (p < 0.01) .

Table 2.22 Effect of humidity on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/g)



Humidity

45%

50%

55%

60%

1

R. rhodochrous T 9

8.27c ± 0.07

9.03a ± 0.01

9.15a ± 0.04

8.57b ± 0.01

2

B. licheniformis B85

8.44c ± 0.06

9.47a ± 0.01

9.56a ± 0.05

8.74b ± 0.02

3

P. stutzeri KL15

8.40d ± 0.01

9.14b ± 0.03

9.30a ± 0.03

8.84c ± 0.02

Bacterial density (Log.CFU/gram) calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences according to the humidity of the bacterial strains (p < 0.01) .

Table 2.23 Effect of time on biomass of three bacterial strains

Status

Bacterial strain


Bacterial density (Log.CFU/g)



Time

36

hour

48

hour

60

hour

72

hour

84

hour

96

hour

1

R.rhodochrous T 9

8.27 d

± 0.1

9.23b

±0.04

9.30b

± 0.05

9.79a

±0.02

9.24b

±0.02

8.94 c

±0.01

2

B. licheniformis B85

8.44 d

±0.06

9.56b

±0.01

9.96a

± 0.01

9.93a

±0.02

9.57b

±0.02

9.10 c

±0.01

3

P. stutzeri KL15

8.40 e

±0.01

9.30 c

±0.03

9.44 bc

± 0.06

9.70a

±0.01

9.50b

±0.02

9.12 d

±0.01

Bacterial density (Log.CFU/gram) is calculated as the logarithm base 10 of the average of 3 replicates. Letters a, b, c indicate statistical differences over time of bacterial strains (p < 0.01).

2.6.2 Survey of storage conditions of bacterial strains on semi-solid media Table 2.24 Effect of time on biomass of three bacterial

Bacterial density

Temperature ( oC )

Time

B. licheniformis B85

P. stutzeri KL15

R.rhodochrous T 9

(day)

(log.CFU/g)

(log.CFU/g)

(log.CFU/g)


0

9.72 ± 0.01

9.52 ±0.05

9.26 ± 0.03


30

9.61 ± 0.03

9.36 ± 0.02

9.18 ± 0.01

4 - 8

60

9.42 ± 0.02

9.26 ± 0.03

9.07 ± 0.02


90

9.21 ± 0.03

9.11 ± 0.01

8.93 ± 0.03


120

9.11 ± 0.02

8.94 ± 0.01

8.79 ± 0.05

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